Post year-end payroll mistakes to avoid

22.05.2026

The start of a new tax year is always a busy time for businesses. With the 2026/27 tax year now underway, many employers are already settling into new payroll routines, updating records and making sure everything submitted at year-end was accurate and complete. But even after the year-end deadline has passed, payroll mistakes can still create problems. From incorrect employee data to missed HMRC submissions, small errors can lead to unnecessary stress, delays and potential penalties.


Forgetting to update employee records


The new tax year is the perfect time to review employee details, but it’s something many businesses overlook once April has passed.


Incorrect addresses, outdated tax codes or changes to student loan deductions can all affect payroll accuracy. If employee information isn’t updated promptly, it can result in incorrect payments or HMRC reporting issues later in the year.


It’s worth carrying out regular checks to make sure records remain accurate, especially if your workforce changes frequently or includes seasonal staff.


Missing HMRC notices and updates


Payroll legislation changes regularly, and businesses need to keep up with HMRC notifications throughout the year, not just at year-end.


Missing tax code notices, student loan updates or changes to statutory pay rates can quickly lead to payroll errors. Businesses relying on manual processes are particularly vulnerable, as notices can easily be missed or filed incorrectly.


Using payroll software that automatically retrieves HMRC notices helps reduce the risk of errors and keeps payroll aligned with current legislation.


Incorrect statutory pay calculations


Statutory Sick Pay, Maternity Pay, Paternity Pay, Shared Parental Pay and Neo-natal Pay all come with specific rules and calculations. Mistakes often happen when businesses try to calculate these manually or rely on outdated guidance.


Even after year-end, employers should ensure their payroll processes are correctly handling statutory payments for the current tax year, particularly if there have been changes to employee circumstances.


Accurate calculations not only help maintain compliance but also avoid underpayments or overpayments that can be time-consuming to correct later.


Leaving payroll until the last minute


One of the biggest payroll challenges for small businesses is time. Payroll is often squeezed between other priorities, increasing the likelihood of rushed submissions and avoidable mistakes.


Late RTI submissions, forgotten employee hours, or missed pension contributions can all happen when payroll becomes reactive instead of planned.


Creating a consistent payroll process each pay period helps reduce pressure and gives more time to spot issues before submissions are sent to HMRC.


Poor payroll record keeping


HMRC requires payroll records to be retained for several years, yet many businesses still rely on spreadsheets, manual filing systems or locally stored backups. This can become a major issue if information is needed for audits, employee queries or corrections to previous tax years.


Cloud-based payroll systems make it much easier to securely access historical payslips, reports, and submission records whenever needed, without worrying about backups or lost files.


Overcomplicating payroll processes


For many small businesses, payroll becomes more complicated than it needs to be. Multiple spreadsheets, disconnected systems and manual calculations all increase the risk of mistakes.


As businesses grow, payroll requirements also become more demanding. Managing pensions, CIS subcontractors, expenses, statutory returns and employee records manually can quickly become difficult to maintain.


Using a payroll system designed specifically for small businesses can help simplify processes, reduce admin time and improve accuracy across the board.


Making payroll easier with MyPAYE


If you’re looking to reduce payroll admin and avoid common payroll mistakes throughout the tax year, MyPAYE offers a straightforward cloud-based payroll solution designed for small businesses.


MyPAYE helps businesses manage HMRC RTI submissions, statutory pay calculations, pension auto enrolment, payslip production, CIS requirements and employee payroll records all in one place. Because the software is cloud-based, there’s no need for installs or manual backups, making payroll management more flexible and easier to access wherever you’re working.


The system is designed to help businesses stay compliant with changing payroll legislation while reducing the amount of manual admin involved in day-to-day payroll tasks. Features such as automatic HMRC notice retrieval, integrated timesheets and expenses and multi-payroll management can also help minimise errors and save valuable time each pay period.


If you’d like to know more or try the software for free, contact us here.

Sign up for a free trial today and see how our cloud accounting software can benefit your business.

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